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Which of the following describes the function of the H protein, sometimes known as the tape measure, during assembly of the λ virion?


A) It controls the amount of viral DNA packaged into the head.
B) It controls the length of the tail.
C) It controls the size of the head.
D) It cleaves the viral DNA and produces the cos sites.
E) It attaches the tail to the head.

F) C) and E)
G) A) and E)

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When bacterial cells that have an integrated λ prophage in their genomes are treated with UV light, it leads to cleavage of the cI repressor.Which of the following host cell proteins activates the autoprotease activity of the cI repressor?


A) DNA excision repair enzyme
B) LexA
C) RecA
D) GroES
E) Exonuclease III

F) A) and B)
G) A) and C)

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Retroregulation limits expression of the Int protein during lytic growth.The mechanism of retroregulation involves which of the following?


A) Binding of an antisense RNA that inhibits translation of the int mRNA.
B) Degradation of the Int protein by cellular proteases.
C) Inhibition of transcription from Pint.
D) Specific degradation of the int mRNA by Exonuclease III.
E) Termination of transcription upstream of the int coding region.

F) A) and D)
G) B) and E)

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The λ phage immediate-early proteins N and cro are expressed only when the virus lysogenizes the host cell.

A) True
B) False

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False

How does the binding of the λ phage cI repressor to OR1 and OR2 block transcription from PR?


A) It prevents the RNA polymerase from transcribing down the gene.
B) It blocks binding of the RNA polymerase to the -10 and -35 sites on the promoter.
C) It terminates transcription at an earlier terminator.
D) It leads to the degradation of the RNA produced from PR.
E) It activates a promoter that produces an antisense transcript.

F) A) and C)
G) A) and E)

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Why is binding of the λ phage cI repressor to OR1 and OR2 necessary for transcription from PRM?


A) It facilitates binding of the RNA polymerase to PRM.
B) It blocks transcription from PL which competes for the RNA polymerase.
C) It prevents transcription of an antisense RNA.
D) It stabilizes the transcript from PRM.
E) It allows read through a transcriptional terminator.

F) B) and C)
G) A) and E)

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The λphage will lysogenize the host cell if which of the following proteins is produced in sufficient levels during infection?


A) N
B) CI
C) Q
D) Integrase
E) Cro

F) A) and E)
G) C) and D)

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B

In order to transcribe the late structure genes found on the left hand side of the λ phage genome, which of the following must occur?


A) The phage genome must be integrated into the host chromosome.
B) The phage genome must be linear.
C) The phage genome must be circularized
D) The phage genome must be replicated into many copies.
E) The phage genome must be ligated into concatmers.

F) A) and B)
G) B) and E)

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How does the cro protein from λ phage help to establish a lytic infection?


A) It inhibits the integrase enzyme.
B) It activates the excision enzyme.
C) It binds to OL1 and blocks transcription from PL
D) It binds to OR1 and blocks transcription from PR
E) It binds to OR3 and blocks transcription from PRM.

F) A) and C)
G) A) and B)

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The cI repressor of the λ phage binds to several locations on the viral genome.Which of the following is the term that describes these binding sites?


A) Operators
B) Cos sites
C) Promoters
D) Terminators
E) AttP sites

F) D) and E)
G) A) and B)

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The cIII protein from λ phage inhibits cellular proteases that would degrade the cII protein.

A) True
B) False

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Which of the following terms describes a bacterial cell that has a repressed copy of a bacteriophage genome integrated into its chromosome?


A) Lysogenic
B) Temperate
C) Prophage
D) Lytic
E) Lysogen

F) B) and E)
G) A) and C)

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Which of the following statements about the transcripts from λ phage that terminate at the transcriptional terminators tL1 and tR1 is FALSE?


A) They are expressed at immediate-early times.
B) The encode the proteins N and cro.
C) They are expressed first in the transcriptional program.
D) They contain NUT sequences.
E) They can be antiterminated by the Q protein.

F) B) and C)
G) A) and C)

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Explain how the binding affinity of the λ phage cI repressor to the three rightward operators (OR1, OR2, OR3)controls transcription from both PR and PRM?

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The l phage cI repressor binds to the th...

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DNA replication of the genome of the λ phage takes place through a rolling circle mechanism.Which of the following describes the products of this type of DNA replication?


A) Individual circular dsDNA genomes.
B) Individual linear dsDNA genomes.
C) Concatemers of dsDNA genomes.
D) Individual circular ssDNA genomes.
E) Individual linear ssDNA genomes.

F) C) and D)
G) B) and E)

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If a λ phage lysogen were superinfected with the same strain of l phage, the cI repressor would inhibit lytic replication from the incoming phage genome.

A) True
B) False

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CRISPR elements are places in the bacterial chromosome where phage genomes integrate during lysogeny.

A) True
B) False

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Explain the mechanisms by which treatment of a λ phage lysogen with UV light leads to the induction of the prophage and the production of virus particles.

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Treatment of host cells with UV light induces the SOS gene pathway, which serves to repair damage in the cellular genome.The expression of the SOS genes is normally inhibited by the cellular LexA repressor.Induction of the SOS genes requires activation of the "co-protease" activity of the RecA protein, which enhances the autoprotease activity of the LexA repressor.The LexA repressor cleaves itself into two domains, which inactivates is repressor activity and allows the SOS genes to be expressed.In addition to activating the autoprotease activity of the LexA protein, RecA can also activate a similar activity in the λ repressor cI.This leads to the cleavage of cI into two domains.Inactivation of cI removes the repressor from the operators and activates the expression from PR and PL, which allows the lytic growth program to begin.

When there are high levels of the cI repressor of λ phage then both PR and PRM are at maximal levels of transcription.

A) True
B) False

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What is the function of the Int protein from λ phage?


A) It mediates site specific recombination between attP and attB.
B) It ligates the ends of the viral chromosome.
C) It binds to multiple sites within the origin or replication.
D) It recruits the cellular DNA replication enzymes to the viral genome.
E) It acts as a scaffolding protein for virion assembly.

F) D) and E)
G) A) and E)

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